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1.
Soft Matter ; 2024 Apr 23.
Artigo em Inglês | MEDLINE | ID: mdl-38651457

RESUMO

We investigate the effects of uniform viscosity gradients on the spontaneous oscillations of an elastic, active filament in viscous fluids. Combining numerical simulations and linear stability analysis, we demonstrate that a viscosity gradient increasing from the filament's base to tip destabilises the system, facilitating its self-oscillation. This effect is elucidated through a reduced-order model, highlighting the delicate balance between destabilising active forces and stabilising viscous forces. Additionally, we reveal that while a perpendicular viscosity gradient to the filament's orientation minimally affects instability, it induces asymmetric ciliary beating, thus generating a net flow along the gradient. Our findings offer new insights into the complex behaviours of biological and artificial filaments in complex fluid environments, contributing to the broader understanding of filament dynamics in heterogeneous viscous media.

2.
Materials (Basel) ; 17(5)2024 Mar 04.
Artigo em Inglês | MEDLINE | ID: mdl-38473660

RESUMO

In this study, the effects of Z-0°, Z-67°, Z-90°, I-67°, and S-67° scanning strategies on the surface morphology, microstructure, and corrosion resistance of the specimens in SLM316L were systematically studied. The results show that the partition scanning path can effectively improve the manufacturing quality of the specimen, reduce the cumulative roughness layer by layer, and increase the density of the specimen. The scan path of the island partition of the fine partition is better than that of the strip partition; moreover, the 67° rotation between each layer reduces the accumulation of the height difference of the melt pool, fills the scanning gap of the previous layer, and improves the molding quality of the sample. Electrochemical tests were performed in an aqueous solution of NaCl (3.5 wt%), including open-circuit potential (OCP), dynamic potential polarization, and electrochemical impedance spectroscopy (EIS). The results show that the specimen with a 67° rotation between each layer achieves stability of the surface potential in a short time, and the I-67° specimen exhibits good corrosion performance, while the Z-0° specimen has the worst corrosion resistance.

3.
Clin Oral Investig ; 27(12): 7513-7521, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37907704

RESUMO

OBJECTIVES: This study was to investigate the causal relationship between temporomandibular disorders (TMD) and psychiatric disorders by Mendelian randomization (MR) analysis. MATERIALS AND METHODS: A two-sample bidirectional MR analysis was adopted to systematically explore the causal relationship between TMD and eight psychiatric traits, including anxiety disorder (AD), panic disorder (PD), major depressive disorder (MDD), neuroticism, attention deficit hyperactivity disorder (ADHD), autism spectrum disorder (ASD), bipolar disorder (BIP), and schizophrenia (SCZ). Inverse variance weighted (IVW), weighted median, and MR-Egger regression were used in my study. Furthermore, we also performed three sensitivity analyses to illustrate the reliability of the analysis. RESULTS: Two psychiatric traits have risk effects on TMD: PD (OR = 1.118, 95% CI: 1.047-1.194, P = 8.161 × 10-4, MDD (OR = 1.961, 95% CI: 1.450-2.653, P = 1.230 × 10-5). Despite not surpassing the strict Bonferroni correction applied (P > 0.00625), we could think that there was a suggestive causal effect of neuroticism and SCZ increasing the risk of TMD. On the reverse MR analysis, we found no significant evidence of causal effects of TMD on these psychiatric traits. Except for heterogeneity in the causal analysis for SCZ on TMD, no heterogeneity and horizontal pleiotropy were detected in the other analyses. CONCLUSIONS: Our two-sample MR study has provided further evidence of PD and MDD being related to a higher risk of TMD. CLINICAL RELEVANCE: These findings highlight the importance of closely monitoring mental traits during future TMD treatments to prevent an increased risk of TMD.


Assuntos
Transtorno do Espectro Autista , Transtorno Depressivo Maior , Transtornos da Articulação Temporomandibular , Humanos , Análise da Randomização Mendeliana , Reprodutibilidade dos Testes , Transtornos da Articulação Temporomandibular/genética , Estudo de Associação Genômica Ampla
4.
Materials (Basel) ; 16(15)2023 Jul 27.
Artigo em Inglês | MEDLINE | ID: mdl-37570001

RESUMO

The use of cemented Aeolian sand-fly ash backfill (CAFB) material to fill the mining area to improve the surface subsidence damage caused by underground coal mining is in the development stage. Their performance with large overflow water and strength loss is not well understood. Few research has been conducted to understand the effects of aeolian sand and coal gangue on the rheological properties of CAFB with plasticizers. Therefore, this study aims to investigate the effects of a plasticizer on the rheological properties, specifically yield stress and viscosity, of CAFB prepared with aeolian sand and coal gangue. CAFB mixes containing 0%, 0.05%, and 0.1% plasticizers were prepared, and yield stress and viscosity were determined at different intervals. Additional tests, such as thermal analysis and zeta potential analysis, were also conducted. It was found that the rheological properties of CAFB are the comprehensive manifestation of the composite characteristics of various models. Reasonable particle size distribution and less plasticizer can ensure the stability of the slurry structure and reduce the slurry settlement and the risk of pipe blocking. The findings of this study will be beneficial in the design and production of CAFB material.

5.
J Bone Miner Metab ; 41(5): 673-681, 2023 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-37507596

RESUMO

INTRODUCTION: Observational studies demonstrated that the relationship between bone mineral density and oral diseases is mixed. To access the association between heel bone mineral density and various oral diseases, we conducted the Mendelian randomization analysis to explore the association. MATERIALS AND METHODS: Two-sample bidirectional Mendelian analysis was used to explore the relationship between heel bone mineral density and various oral diseases. The inverse-variance weighted (IVW) was used as the primary effect estimate, and various methods were applied to test the reliability and stability of the results, namely MR-Egger, weighted median, simple mode, and weighted mode. RESULTS: This study showed that there was a negative relationship between heel BMD and periodontitis when heel BMD was used as an exposure factor and periodontitis as an outcome factor (IVW OR = 0.85; 95% CI, 0.75-0.95; p = 0.005). Bidirectional Mendelian randomization showed that there was no statistically significant association between periodontitis and heel bone mineral density when chronic periodontitis was the exposure factor (p > 0.05). And there was no significant relationship between heel bone mineral density and other oral diseases (dental caries, diseases of pulp and periapical tissues, impacted teeth, cleft lip, and cleft palate, oral and oropharyngeal cancer) (p > 0.05). CONCLUSION: This study showed that there was a negative relationship between heel bone density and periodontitis, and the decrease in heel bone density could promote the occurrence of periodontitis. In addition, there was no statistically significant relationship between heel bone density and other oral diseases.


Assuntos
Cárie Dentária , Fraturas Ósseas , Humanos , Densidade Óssea/genética , Análise da Randomização Mendeliana , Reprodutibilidade dos Testes , Polimorfismo de Nucleotídeo Único
6.
BMC Med Imaging ; 23(1): 41, 2023 03 25.
Artigo em Inglês | MEDLINE | ID: mdl-36964517

RESUMO

BACKGROUND: Although the morphological changes of sella turcica have been drawing increasing attention, the acquirement of linear parameters of sella turcica relies on manual measurement. Manual measurement is laborious, time-consuming, and may introduce subjective bias. This paper aims to develop and evaluate a deep learning-based model for automatic segmentation and measurement of sella turcica in cephalometric radiographs. METHODS: 1129 images were used to develop a deep learning-based segmentation network for automatic sella turcica segmentation. Besides, 50 images were used to test the generalization ability of the model. The performance of the segmented network was evaluated by the dice coefficient. Images in the test datasets were segmented by the trained segmentation network, and the segmentation results were saved in binary images. Then the extremum points and corner points were detected by calling the function in the OpenCV library to obtain the coordinates of the four landmarks of the sella turcica. Finally, the length, diameter, and depth of the sella turcica can be obtained by calculating the distance between the two points and the distance from the point to the straight line. Meanwhile, images were measured manually using Digimizer. Intraclass correlation coefficients (ICCs) and Bland-Altman plots were used to analyze the consistency between automatic and manual measurements to evaluate the reliability of the proposed methodology. RESULTS: The dice coefficient of the segmentation network is 92.84%. For the measurement of sella turcica, there is excellent agreement between the automatic measurement and the manual measurement. In Test1, the ICCs of length, diameter and depth are 0.954, 0.953, and 0.912, respectively. In Test2, ICCs of length, diameter and depth are 0.906, 0.921, and 0.915, respectively. In addition, Bland-Altman plots showed the excellent reliability of the automated measurement method, with the majority measurements differences falling within ± 1.96 SDs intervals around the mean difference and no bias was apparent. CONCLUSIONS: Our experimental results indicated that the proposed methodology could complete the automatic segmentation of the sella turcica efficiently, and reliably predict the length, diameter, and depth of the sella turcica. Moreover, the proposed method has generalization ability according to its excellent performance on Test2.


Assuntos
Aprendizado Profundo , Sela Túrcica , Humanos , Sela Túrcica/diagnóstico por imagem , Reprodutibilidade dos Testes , Raios X , Radiografia
7.
Adv Mater ; 35(21): e2211175, 2023 May.
Artigo em Inglês | MEDLINE | ID: mdl-36891767

RESUMO

Biological materials relied on multiple synergistic structural design elements typically exhibit excellent comprehensive mechanical properties. Hierarchical incorporation of different biostructural elements into a single artificial material is a promising approach to enhance mechanical properties, but remains challenging. Herein, a biomimetic structural design strategy is proposed by coupling gradient structure with twisted plywood Bouligand structure, attempting to improve the impact resistance of ceramic-polymer composites. Via robocasting and sintering, kaolin ceramic filaments reinforced by coaxially aligned alumina nanoplatelets are arranged into Bouligand structure with a gradual transition in filament spacing along the thickness direction. After the following polymer infiltration, biomimetic ceramic-polymer composites with a gradient Bouligand (GB) structure are eventually fabricated. Experimental investigations reveal that the incorporation of gradient structure into Bouligand structure improves both the peak force and total energy absorption of the obtained ceramic-polymer composites. Computational modeling further suggests the substantial improvement in impact resistance by adopting GB structure, and clarifies the underlying deformation behavior of the biomimetic GB structured composites under impact. This biomimetic design strategy may provide valuable insights for developing lightweight and impact-resistant structural materials in the future.

8.
Spectrochim Acta A Mol Biomol Spectrosc ; 291: 122338, 2023 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-36657288

RESUMO

Autophagy is the controlled breakdown of cellular components that dysfunctional or nonessential, and the decomposition products are further recycled and synthesized for the normal physiological activities of cells. Lysosomal autophagy has been implicated in cancer, neurological disorders, Parkinson's disease, etc. Therefore, it is necessary to develop a fluorescent probe that can clearly describe the process of lysosomal autophagy. However, there are currently limited fluorescent probes for ratiometric monitoring of the autophagic process in dual channels. To solve this problem, a fluorescent probe based on spiropyran with lysosomal targeting and pH response for ratiometric monitoring the autophagy process of lysosomes were designed. The sensitive response of the probe to pH in vitro was verified by UV and fluorescence spectrum tests. Meanwhile, the probe demonstrated the ability to monitor the intracellular pH fluctuations. In addition, the application of Lyso-SD in the field of anti-counterfeiting has been proposed based on the obvious photoluminescence ability of Lyso-SD under UV irradiation.


Assuntos
Corantes Fluorescentes , Lisossomos , Humanos , Corantes Fluorescentes/química , Concentração de Íons de Hidrogênio , Lisossomos/metabolismo , Autofagia , Células HeLa
9.
Infant Behav Dev ; 70: 101799, 2023 02.
Artigo em Inglês | MEDLINE | ID: mdl-36535120

RESUMO

This study investigates differences in the language environments experienced by multilingual and monolingual infants in early childhood education and care (ECEC) settings. The Language Environment Analysis (LENA) technology was used to collect day-long audio-recordings from 181 one-year-old infants (age range from 12 to 21 months). We examined whether infants' multilingual status predicts the amount of educators' language input (adult word count, AWC), child vocalizations (CVC) and conversational turns (CTC), as well as interaction effects on AWC, CVC and CTC of infants' multilingual status and other infant, home and ECEC characteristics. Multilevel mixed effects models revealed no main effect of infants' multilingual status on the language environment outcome variables. Instead, infant gender significantly predicted adult word count, with female infants hearing more words from educators than male infants. There was a significant interaction effect between the infants' multilingual status and both their age and length of time in an ECEC setting on child vocalizations. While monolingual infants produced more vocalizations as their age increased, multilingual infants did not show this increase in vocalizations with age. Further, the difference between monolingual and multilingual children's vocalizations decreased as the length of time in ECEC increased. There were no significant predictors of conversational turns. Findings from this study suggest that early childhood educators do not adjust their talk according to the multilingual status of the infants. However, multilingual infants do not increase their vocalizations as their age increases to the same extent as do their monolingual peers. The interaction effect between multilingualism and the length of ECEC attendance also implies that ECEC environments may be particularly beneficial for supporting multilingual infants' vocalizations. This study highlights the need to provide pedagogical support to educators to help them to encourage multilingual infants' vocalizations in ECEC settings.


Assuntos
Multilinguismo , Adulto , Criança , Humanos , Masculino , Lactente , Pré-Escolar , Feminino , Austrália , Idioma , Desenvolvimento da Linguagem , Comunicação
10.
Cell Biosci ; 12(1): 208, 2022 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-36572910

RESUMO

BACKGROUND: Colorectal cancer (CRC), a commonly diagnosed cancer often develops slowly from benign polyps called adenoma to carcinoma. Altered gut microbiota is implicated in colorectal carcinogenesis. It is warranted to find non-invasive progressive microbiota biomarkers that can reflect the dynamic changes of the disease. This study aimed to identify and evaluate potential progressive fecal microbiota gene markers for diagnosing advanced adenoma (AA) and CRC. RESULTS: Metagenome-wide association was performed on fecal samples from different cohorts of 871 subjects (247 CRC, 234 AA, and 390 controls). We characterized the gut microbiome, identified microbiota markers, and further constructed a colorectal neoplasms classifier in 99 CRC, 94 AA, and 62 controls, and validated the results in 185 CRC, 140 AA, and 291 controls from 3 independent cohorts. 21 species and 277 gene markers were identified whose abundance was significantly increased or decreased from normal to AA and CRC. The progressive gene markers were distributed in metabolic pathways including amino acid and sulfur metabolism. A diagnosis model consisting of four effect indexes was constructed based on the markers, the sensitivities of the Adenoma Effect Index 1 for AA, Adenoma Effect Index 2 for high-grade dysplasia (HGD) adenoma were 71.3% and 76.5%, the specificities were 90.5% and 90.3%, respectively. CRC Effect Index 1 for all stages of CRC and CRC Effect Index 2 for stage III-IV CRC to predict CRC yielded an area under the curve (AUC) of 0.839 (95% CI 0.804-0.873) and 0.857 (95% CI 0.793-0.921), respectively. Combining with fecal immunochemical test (FIT) significantly improved the sensitivity of CRC Effect Index 1 and CRC Effect Index 2 to 96.7% and 100%. CONCLUSIONS: This study reports the successful diagnosis model establishment and cross-region validation for colorectal advanced adenoma and carcinoma based on the progressive gut microbiota gene markers. The results suggested that the novel diagnosis model can significantly improve the diagnostic performance for advanced adenoma.

11.
Adv Sci (Weinh) ; 9(6): e2104867, 2022 02.
Artigo em Inglês | MEDLINE | ID: mdl-35023329

RESUMO

The application of prestresses is a valuable strategy for enhancing the overall mechanical performances of structural materials. Residual stresses, acting as prestresses, exist naturally in biological structural materials, such as the nacre with the 3D "brick-and-mortar" arrangement. Although regulation of the tablets sliding has recently been demonstrated to be vital to improve toughness in synthetic nacre-like structures, the effects of prestresses on the tablets-sliding mechanism in these nacre-like structures remain unclear. Here, by a combination of simulation, additive manufacturing, and drop tower testing the authors reveal that, at a critical prestress, synergistic effects between the prestress-enhanced tablets sliding and prestress-weakened structural integrality result in optimized impact resistance of nacre-like structures. Furthermore, the prestressing strategy is easily implemented to a designed nacre-inspired separator to enhance the impact resistance of lithium batteries. The findings demonstrate that the prestressing strategy combined with bioinspired architectures can be exploited for enhancing the impact resistance of engineering structural materials and energy storage devices.

12.
Front Med (Lausanne) ; 8: 777961, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-35211481

RESUMO

Slow transit constipation (STC) is one of the most frequent gastrointestinal diagnoses. In this study, we conducted a quantitative metagenomics study in 118 Chinese individuals. These participants were divided into the discovery cohort of 50 patients with STC and 40 healthy controls as well as a validation cohort of 16 patients and 12 healthy controls. We found that the intestinal microbiome of patients with STC was significantly different from that of healthy individuals at the phylum, genus, and species level. Patients with STC had markedly higher levels of Alistipes and Eubacterium and lower abundance of multiple species belonging to the Roseburia genus. Patients with STC gene expression levels and the Kyoto Encyclopedia of Genes and Genomes (KEGG) orthology pathway (such as fatty acid biosynthesis, butanoate metabolism, and methane metabolism pathways) enrichment were also substantially different from those of healthy controls. These microbiome and metabolite differences may be valuable biomarkers for STC. Our findings suggest that alteration of the microbiome may lead to constipation by changing the levels of microbial-derived metabolites in the gut. Above findings may help us in the development of microbial drugs.

13.
Materials (Basel) ; 13(24)2020 Dec 09.
Artigo em Inglês | MEDLINE | ID: mdl-33317093

RESUMO

Graded cellular material is a superb sandwich candidate for blast alleviation, but it has a disadvantage for the anti-blast design of sacrificial cladding, i.e., the supporting stress for the graded cellular material cannot maintain a constant level. Thus, a density graded-uniform cellular sacrificial cladding was developed, and its anti-blast response was investigated theoretically and numerically. One-dimensional nonlinear plastic shock models were proposed to analyze wave propagation in density graded-uniform cellular claddings under blast loading. There are two shock fronts in a positively graded-uniform cladding; while there are three shock fronts in a negatively graded-uniform cladding. Response features of density graded-uniform claddings were analyzed, and then a comparison with the cladding based on the uniform cellular material was carried out. Results showed that the cladding with uniform cellular materials is a good choice for the optimal mass design, while the density graded-uniform cladding is more advantageous from the perspective of the critical length design indicator. A partition diagram for the optimal length of sacrificial claddings under a defined blast loading was proposed for engineering design. Finally, cell-based finite element models were applied to verify the anti-blast response results of density graded-uniform claddings.

14.
Environ Pollut ; 251: 885-891, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-31234254

RESUMO

Guangdong Province, which is located in southern China, has a tropical climate with high temperatures and humidity, making it extremely unfavourable for the corrosion resistance of various materials. Meanwhile, as a quickly developing region in China, Guangdong Province is also facing multi-pollutant conditions, which seriously affect the atmospheric degradation of the materials in this region. It is therefore necessary to identify the key air pollutants that affect the atmospheric corrosivity of Guangdong Province and to propose targets of air pollutant control. An analysis of the environmental data and corrosion rates in Guangdong Province showed that the atmospheric corrosivity of the entire region is closely related to the presence of sulfur dioxide (SO2) and ozone (O3). In addition, a superposition model was utilised to reflect the synergistic effect of SO2 and O3, and a superimposed map of both pollutants was drawn to demonstrate their amount. To control the corrosion rate of carbon steel and avoid exceeding the C2 classification in ISO 9223, the following targets of air pollutant control are proposed: an SO2 concentration of lower than 10 µg m-3 and an O3 level of lower than 85 µg m-3.


Assuntos
Poluentes Atmosféricos/análise , Poluição do Ar/análise , Monitoramento Ambiental/métodos , Ozônio/análise , Dióxido de Enxofre/análise , China , Corrosão , Temperatura Alta , Umidade , Dióxido de Nitrogênio/análise , Material Particulado/análise
15.
Sci Rep ; 9(1): 3453, 2019 03 05.
Artigo em Inglês | MEDLINE | ID: mdl-30837612

RESUMO

Intestinal microbiota plays a crucial role in immune development and disease progression in mammals from birth onwards. The gastrointestinal tract of newborn mammals is rapidly colonized by microbes with tremendous biomass and diversity. Understanding how this complex of segmental communities evolves in different gastrointestinal sites over time has great biological significance and medical implications. However, most previous reports examining intestinal microbiota have focused on fecal samples, a strategy that overlooks the spatial microbial dynamics in different intestinal segments. Using intestinal digesta from six intestinal segments (duodenum, jejunum, ileum, cecum, colon and rectum) of newborn piglets, we herein conducted a large-scale 16S rRNA gene sequencing-based study to characterize the segmental dynamics of porcine gut microbiota at eight postnatal intervals (days 1, 7, 14, 21, 28, 35, 120 and 180). A total of 4,465 OTUs were obtained and showed that the six intestinal segments could be divided into three parts; in the duodenum-jejunum section, the most abundant genera included Lactobacillus and Bacteroides; in the ileum, Fusobacterium and Escherichia; and in the cecum-rectum section, Prevotella. Although the microbial communities of the piglets were similar among the six intestinal segments on postnatal day 1, they evolved and quickly differentiated at later intervals. An examination of time-dependent alterations in the dominant microbes revealed that the microbiome in the large intestine was very different from and much more stable than that in the small intestine. The gut microbiota in newborn piglets exhibited apparent temporal and spatial variations in different intestinal segments. The database of gut microbes in piglets could be a referable resource for future studies on mammalian gut microbiome development in early host growth phases.


Assuntos
Biodiversidade , Microbioma Gastrointestinal , Metagenoma , Metagenômica , Fatores Etários , Animais , Animais Recém-Nascidos , Fezes/microbiologia , Sequenciamento de Nucleotídeos em Larga Escala , Metagenômica/métodos , RNA Ribossômico 16S , Suínos
16.
Sci Rep ; 8(1): 5502, 2018 04 03.
Artigo em Inglês | MEDLINE | ID: mdl-29615755

RESUMO

Methamphetamine (MA) abuse has been rising rapidly over the past decade, however, its impact in spatial cognitive function remains unknown. To understand its effect on visuospatial ability and spatial orientation ability, 40 MA users and 40 non-MA users conducted the Simple Reaction Task (Task 1), the Spatial Orientation Task (Task 2), and the Mental Rotation Task (Task 3), respectively. There was no significant difference in either accuracy or reaction time (RT) between 2 groups in Task 1. During Task 2, in comparison with non-MA users, MA users performed poorer on RT, but not in accuracy for foot and hand stimuli. In addition, both non-MA and MA users responded much more quickly to upward stimuli than downward stimuli on vertical surface, however, only non-MA users exhibited leftward visual field advantage in horizontal orientation processing. As for Task 3, MA users exhibited poorer performance and more errors than their healthy counterparts. For each group, linear relationship was revealed between RT and orientation angle, whereas MA abuse led to longer intercept for all stimuli involved. Our findings suggested that MA abuse may lead to a general deficit in the visuospatial ability and the spatial orientation ability with more serious impact in the former.


Assuntos
Transtornos Relacionados ao Uso de Anfetaminas/fisiopatologia , Cognição/efeitos dos fármacos , Metanfetamina/farmacologia , Comportamento Espacial/efeitos dos fármacos , Adulto , Feminino , Humanos , Masculino , Orientação Espacial/efeitos dos fármacos , Comportamento Espacial/fisiologia
18.
Genome Biol ; 18(1): 142, 2017 07 27.
Artigo em Inglês | MEDLINE | ID: mdl-28750650

RESUMO

BACKGROUND: The assessment and characterization of the gut microbiome has become a focus of research in the area of human autoimmune diseases. Ankylosing spondylitis is an inflammatory autoimmune disease and evidence showed that ankylosing spondylitis may be a microbiome-driven disease. RESULTS: To investigate the relationship between the gut microbiome and ankylosing spondylitis, a quantitative metagenomics study based on deep shotgun sequencing was performed, using gut microbial DNA from 211 Chinese individuals. A total of 23,709 genes and 12 metagenomic species were shown to be differentially abundant between ankylosing spondylitis patients and healthy controls. Patients were characterized by a form of gut microbial dysbiosis that is more prominent than previously reported cases with inflammatory bowel disease. Specifically, the ankylosing spondylitis patients demonstrated increases in the abundance of Prevotella melaninogenica, Prevotella copri, and Prevotella sp. C561 and decreases in Bacteroides spp. It is noteworthy that the Bifidobacterium genus, which is commonly used in probiotics, accumulated in the ankylosing spondylitis patients. Diagnostic algorithms were established using a subset of these gut microbial biomarkers. CONCLUSIONS: Alterations of the gut microbiome are associated with development of ankylosing spondylitis. Our data suggest biomarkers identified in this study might participate in the pathogenesis or development process of ankylosing spondylitis, providing new leads for the development of new diagnostic tools and potential treatments.


Assuntos
Doenças Autoimunes/microbiologia , Disbiose/microbiologia , Microbioma Gastrointestinal/genética , Genes Bacterianos , Metagenômica/métodos , Espondilite Anquilosante/microbiologia , Adolescente , Adulto , Idoso , Doenças Autoimunes/imunologia , Doenças Autoimunes/patologia , Bacteroides/classificação , Bacteroides/genética , Bacteroides/isolamento & purificação , Bifidobacterium/classificação , Bifidobacterium/genética , Bifidobacterium/isolamento & purificação , Biomarcadores/metabolismo , Estudos de Casos e Controles , Disbiose/imunologia , Disbiose/patologia , Feminino , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Masculino , Pessoa de Meia-Idade , Filogenia , Prevotella/classificação , Prevotella/genética , Prevotella/isolamento & purificação , Espondilite Anquilosante/imunologia , Espondilite Anquilosante/patologia
19.
Sheng Wu Yi Xue Gong Cheng Xue Za Zhi ; 34(1): 129-33, 2017 Feb.
Artigo em Chinês | MEDLINE | ID: mdl-29717600

RESUMO

Traditional classifiers, such as support vector machine and Bayesian classifier, require data normalization for removing experimental batch effects, which limit their applications at the individual level. In this paper,we aim to build a classifier to distinguish lung cancer and non-cancer lung tissues(pneumonia and normal lung tissues).We identified gene pairs as signatures to build a classifier based on the within-sample relative expression orderings of gene pairs in a particular type of tissues(cancer or non-cancer). Using multiple independent datasets as the training data,including a total of 197 lung cancer cases and 189 non-cancer cases, we identified three gene pairs. Classifying a sample by the majority voting rule, the average accuracy reached 95.34% in the training data. Using multiple independent validation datasets, including a total of 251 lung cancer samples and 141 non-cancer samples without data normalization, the average accuracy was as high as 96.78%. The rank-based signature is robust against experimental batch effects and can be used to diagnose lung cancer using samples measured by different laboratories at the individual level.


Assuntos
Neoplasias Pulmonares/genética , Algoritmos , Teorema de Bayes , Biomarcadores Tumorais , Bases de Dados Genéticas , Expressão Gênica , Perfilação da Expressão Gênica , Humanos , Pulmão
20.
Nat Genet ; 48(6): 657-66, 2016 06.
Artigo em Inglês | MEDLINE | ID: mdl-27158781

RESUMO

We report a high-quality chromosome-scale assembly and analysis of the carrot (Daucus carota) genome, the first sequenced genome to include a comparative evolutionary analysis among members of the euasterid II clade. We characterized two new polyploidization events, both occurring after the divergence of carrot from members of the Asterales order, clarifying the evolutionary scenario before and after radiation of the two main asterid clades. Large- and small-scale lineage-specific duplications have contributed to the expansion of gene families, including those with roles in flowering time, defense response, flavor, and pigment accumulation. We identified a candidate gene, DCAR_032551, that conditions carotenoid accumulation (Y) in carrot taproot and is coexpressed with several isoprenoid biosynthetic genes. The primary mechanism regulating carotenoid accumulation in carrot taproot is not at the biosynthetic level. We hypothesize that DCAR_032551 regulates upstream photosystem development and functional processes, including photomorphogenesis and root de-etiolation.


Assuntos
Evolução Biológica , Carotenoides/metabolismo , Daucus carota/genética , Genoma de Planta , Daucus carota/classificação , Daucus carota/metabolismo , Genes Reguladores , Ligação Genética , Marcadores Genéticos , Filogenia , Raízes de Plantas/metabolismo
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